ovrlpy.io.read_MERFISH

ovrlpy.io.read_MERFISH(filepath, z_scale=1.5, *, remove_genes=MERFISH_CTRLS)

Read a Vizgen transcripts file.

Parameters:

  • filepath (PathLike or str) – Path to the Vizgen transcripts file.

  • z_scale (float) – Factor to scale z-plane index to um, i.e. distance between z-planes.

  • remove_genes (Collection[str], optional) – List of regex patterns to filter the ‘gene’ column, ovrlpy.io.MERFISH_CTRLS by default.

Return type:

DataFrame