ovrlpy.io.read_CosMx
- ovrlpy.io.read_CosMx(filepath, scale={'xy': 0.12028, 'z': 0.8}, *, remove_targets=COSMX_CTRLS)
Read a Nanostring CosMx transcripts file.
- Parameters:
filepath (PathLike or str) – Path to the CosMx transcripts file.
scale (Mapping[str, float]) – The factors for scaling the coordinates from pixel space to um.
remove_targets (Collection[str], optional) – List of regex patterns to filter the ‘target’ column,
ovrlpy.io.COSMX_CTRLSby default.
- Return type: