ovrlpy.io

Attributes

XENIUM_CTRLS	Patterns for Xenium controls
ATERA_CTRLS
MERSCOPE_CTRLS	Patterns for Vizgen controls
COSMX_CTRLS	Patterns for CosMx controls

Functions

read_Xenium(filepath, *[, min_qv, remove_features, ...])	Read a Xenium transcripts file.
read_Atera(filepath, *[, min_qv, remove_features, ...])	Read a Xenium transcripts file.
read_MERSCOPE(filepath[, z_scale, remove_genes, ...])	Read a Vizgen transcripts file.
read_CosMx(filepath[, scale, remove_targets, ...])	Read a Nanostring CosMx transcripts file.

Module Contents

ovrlpy.io.XENIUM_CTRLS = ['^BLANK', '^DeprecatedCodeword', '^Intergenic', '^NegControl', '^UnassignedCodeword']

Patterns for Xenium controls

ovrlpy.io.ATERA_CTRLS = ['^Intergenic', '^NegControl', '^UnassignedCodeword']

ovrlpy.io.MERSCOPE_CTRLS = ['^Blank']

Patterns for Vizgen controls

ovrlpy.io.COSMX_CTRLS = ['^NegPrb']

Patterns for CosMx controls