ovrlpy.plot_umap

ovrlpy.plot_umap(ovrlp, *, annotate=True, ax=None, **kwargs)

Plots the UMAP embedding.

Parameters:

• ovrlp (Ovrlp)

• annotate (bool) – Whether to add cell-type annotation if it was calculated using Ovrlp.fit_signatures.

• ax (Axes | None) – Axis object to plot on.

• kwargs – Keyword arguments for matplotlib.pyplot.scatter().