ovrlpy
======

.. py:module:: ovrlpy


Submodules
----------

.. toctree::
   :maxdepth: 1

   /autoapi/ovrlpy/io/index


Attributes
----------

.. autoapisummary::

   ovrlpy.SCALEBAR_PARAMS
   ovrlpy.UMAP_2D_PARAMS
   ovrlpy.UMAP_RGB_PARAMS


Classes
-------

.. toctree::
   :hidden:

   /autoapi/ovrlpy/Ovrlp

.. autoapisummary::

   ovrlpy.Ovrlp


Functions
---------

.. toctree::
   :hidden:

   /autoapi/ovrlpy/plot_pseudocells
   /autoapi/ovrlpy/plot_region_of_interest
   /autoapi/ovrlpy/plot_signal_integrity
   /autoapi/ovrlpy/plot_tissue
   /autoapi/ovrlpy/plot_umap
   /autoapi/ovrlpy/cell_integrity_from_masks
   /autoapi/ovrlpy/cell_integrity_from_transcripts
   /autoapi/ovrlpy/process_coordinates

.. autoapisummary::

   ovrlpy.plot_pseudocells
   ovrlpy.plot_region_of_interest
   ovrlpy.plot_signal_integrity
   ovrlpy.plot_tissue
   ovrlpy.plot_umap
   ovrlpy.cell_integrity_from_masks
   ovrlpy.cell_integrity_from_transcripts
   ovrlpy.process_coordinates


Package Contents
----------------

.. py:data:: SCALEBAR_PARAMS
   :type:  dict[str, Any]

   Default scalebar parameters

.. py:data:: UMAP_2D_PARAMS
   :type:  dict[str, Any]

   Default 2D-UMAP parameters

.. py:data:: UMAP_RGB_PARAMS
   :type:  dict[str, Any]

   Default RGB-UMAP parameters