ovrlpy.plot_tissue

ovrlpy.plot_tissue(ovrlp, *, scalebar=SCALEBAR_PARAMS, ax=None, **kwargs)

Plots the tissue colored by the UMAP embedding.

Parameters:

  • ovrlp (Ovrlp)

  • scalebar (dict[str, Any] | None) – If None no scalebar will be plotted. Otherwise a dictionary with additional kwargs for matplotlib_scalebar.scalebar.ScaleBar. By default ovrlpy.SCALEBAR_PARAMS

  • ax (Axes | None) – Axis object to plot on.

  • kwargs – Keyword arguments for the matplotlib’s scatter plot function.