ovrlpy
======

.. py:module:: ovrlpy


Submodules
----------

.. toctree::
   :maxdepth: 1

   /autoapi/ovrlpy/io/index


Attributes
----------

.. autoapisummary::

   ovrlpy.SCALEBAR_PARAMS
   ovrlpy.UMAP_2D_PARAMS
   ovrlpy.UMAP_RGB_PARAMS


Classes
-------

.. toctree::
   :hidden:

   /autoapi/ovrlpy/Visualizer

.. autoapisummary::

   ovrlpy.Visualizer


Functions
---------

.. toctree::
   :hidden:

   /autoapi/ovrlpy/compute_VSI
   /autoapi/ovrlpy/detect_doublets
   /autoapi/ovrlpy/get_pseudocell_locations
   /autoapi/ovrlpy/plot_region_of_interest
   /autoapi/ovrlpy/plot_signal_integrity
   /autoapi/ovrlpy/pre_process_coordinates
   /autoapi/ovrlpy/run
   /autoapi/ovrlpy/sample_expression_at_xy

.. autoapisummary::

   ovrlpy.compute_VSI
   ovrlpy.detect_doublets
   ovrlpy.get_pseudocell_locations
   ovrlpy.plot_region_of_interest
   ovrlpy.plot_signal_integrity
   ovrlpy.pre_process_coordinates
   ovrlpy.run
   ovrlpy.sample_expression_at_xy


Package Contents
----------------

.. py:data:: SCALEBAR_PARAMS
   :type:  dict[str, Any]

   Default scalebar parameters

.. py:data:: UMAP_2D_PARAMS
   :type:  dict[str, Any]

   Default 2D-UMAP parameters

.. py:data:: UMAP_RGB_PARAMS
   :type:  dict[str, Any]

   Default RGB-UMAP parameters